Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6905163 chr6:26521520 T/C 6.12E-7 178 10.68 32.6 24.53 KM Plot
PCPG rs6905977 chr6:131709443 A/G 2.34E-5 176 24.85 27.27 17.4 KM Plot
PCPG rs6906090 chr6:37619520 T/C 0.000243 175 25.17 25.92 26.62 KM Plot
PCPG rs6910834 chr6:131709715 C/T 2.34E-5 176 24.85 27.27 17.4 KM Plot
PCPG rs6911330 chr6:26524313 A/G 6.03E-7 178 24.53 30.93 10.68 KM Plot
PCPG rs6920662 chr6:150404395 A/G 6.39E-7 173 2.5 23.58 25.97 KM Plot
PCPG rs6923796 chr6:42077516 T/C 1.36E-5 175 25.77 20.47 14.15 KM Plot
PCPG rs6927012 chr6:26471992 A/G 6.04E-7 178 10.68 35.32 24.52 KM Plot
PCPG rs6933778 chr6:131709812 A/G 1.87E-6 178 24.85 27.27 17.4 KM Plot
PCPG rs6935471 chr6:150387312 A/G 1.01E-6 171 1.83 24.53 26.57 KM Plot
PCPG rs6936183 chr6:123124504 A/G 3.53E-6 177 8.67 27.27 24.85 KM Plot
PCPG rs6936666 chr6:123124532 G/A 3.53E-6 177 8.67 27.27 24.85 KM Plot
PCPG rs6944787 chr7:105147309 C/T 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs6949062 chr7:158828015 G/T 0.000187 178 25.6 19.28 41.87 KM Plot
PCPG rs6949195 chr7:158828069 G/T 0.000191 177 25.47 19.87 41.87 KM Plot